Index of /caw_web/dafi

Icon  Name                                                        Last modified      Size  Description
[DIR] Parent Directory - [   ] 031516_Annotation-for Charlie W.xlsx 16-Mar-2016 09:16 13K [   ] 151222Mer_D15-10762_NA_sequence.fastq.gz 14-Mar-2016 11:39 2.1G [   ] 151222Mer_D15-10762_NA_sequence.fastq.trim.gz 16-Mar-2016 15:21 1.4G [   ] 151222Mer_D15-10762_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 11:36 1.9G [   ] 151222Mer_D15-10762_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 05:44 5.5K [   ] 151222Mer_D15-10762_NA_sequence.fastq.untrim.gz 16-Mar-2016 15:21 29M [   ] 151222Mer_D15-10763_NA_sequence.fastq.gz 14-Mar-2016 11:42 1.5G [   ] 151222Mer_D15-10763_NA_sequence.fastq.trim.gz 14-Mar-2016 13:29 952M [   ] 151222Mer_D15-10763_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 11:42 1.3G [   ] 151222Mer_D15-10763_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 05:47 5.5K [   ] 151222Mer_D15-10763_NA_sequence.fastq.untrim.gz 14-Mar-2016 13:29 43M [   ] 151222Mer_D15-10764_NA_sequence.fastq.gz 14-Mar-2016 11:52 1.7G [   ] 151222Mer_D15-10764_NA_sequence.fastq.trim.gz 14-Mar-2016 13:43 1.1G [   ] 151222Mer_D15-10764_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 11:49 1.5G [   ] 151222Mer_D15-10764_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 05:50 5.4K [   ] 151222Mer_D15-10764_NA_sequence.fastq.untrim.gz 14-Mar-2016 13:43 39M [   ] 151222Mer_D15-10765_NA_sequence.fastq.gz 14-Mar-2016 11:56 1.9G [   ] 151222Mer_D15-10765_NA_sequence.fastq.trim.gz 14-Mar-2016 13:57 1.3G [   ] 151222Mer_D15-10765_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 11:58 1.8G [   ] 151222Mer_D15-10765_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 05:54 5.5K [   ] 151222Mer_D15-10765_NA_sequence.fastq.untrim.gz 14-Mar-2016 13:57 25M [   ] 151222Mer_D15-10766_NA_sequence.fastq.gz 14-Mar-2016 11:59 1.9G [   ] 151222Mer_D15-10766_NA_sequence.fastq.trim.gz 14-Mar-2016 14:10 1.1G [   ] 151222Mer_D15-10766_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:05 1.6G [   ] 151222Mer_D15-10766_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 05:57 5.4K [   ] 151222Mer_D15-10766_NA_sequence.fastq.untrim.gz 14-Mar-2016 14:10 184M [   ] 151222Mer_D15-10767_NA_sequence.fastq.gz 14-Mar-2016 12:02 1.7G [   ] 151222Mer_D15-10767_NA_sequence.fastq.trim.gz 14-Mar-2016 14:22 1.0G [   ] 151222Mer_D15-10767_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:10 1.4G [   ] 151222Mer_D15-10767_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:00 5.2K [   ] 151222Mer_D15-10767_NA_sequence.fastq.untrim.gz 14-Mar-2016 14:22 144M [   ] 151222Mer_D15-10768_NA_sequence.fastq.gz 14-Mar-2016 12:04 1.0G [   ] 151222Mer_D15-10768_NA_sequence.fastq.trim.gz 14-Mar-2016 14:29 607M [   ] 151222Mer_D15-10768_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:12 832M [   ] 151222Mer_D15-10768_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:02 5.2K [   ] 151222Mer_D15-10768_NA_sequence.fastq.untrim.gz 14-Mar-2016 14:29 91M [   ] 151222Mer_D15-10769_NA_sequence.fastq.gz 14-Mar-2016 12:07 1.8G [   ] 151222Mer_D15-10769_NA_sequence.fastq.trim.gz 14-Mar-2016 14:43 1.1G [   ] 151222Mer_D15-10769_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:19 1.5G [   ] 151222Mer_D15-10769_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:05 5.4K [   ] 151222Mer_D15-10769_NA_sequence.fastq.untrim.gz 14-Mar-2016 14:43 138M [   ] 151222Mer_D15-10770_NA_sequence.fastq.gz 14-Mar-2016 12:11 2.6G [   ] 151222Mer_D15-10770_NA_sequence.fastq.trim.gz 14-Mar-2016 15:04 1.7G [   ] 151222Mer_D15-10770_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:27 2.4G [   ] 151222Mer_D15-10770_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:11 5.5K [   ] 151222Mer_D15-10770_NA_sequence.fastq.untrim.gz 14-Mar-2016 15:04 23M [   ] 151222Mer_D15-10771_NA_sequence.fastq.gz 14-Mar-2016 12:13 1.1G [   ] 151222Mer_D15-10771_NA_sequence.fastq.trim.gz 14-Mar-2016 15:12 747M [   ] 151222Mer_D15-10771_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:30 1.0G [   ] 151222Mer_D15-10771_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:13 5.4K [   ] 151222Mer_D15-10771_NA_sequence.fastq.untrim.gz 14-Mar-2016 15:12 27M [   ] 151222Mer_D15-10772_NA_sequence.fastq.gz 14-Mar-2016 12:15 927M [   ] 151222Mer_D15-10772_NA_sequence.fastq.trim.gz 14-Mar-2016 15:20 618M [   ] 151222Mer_D15-10772_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:33 861M [   ] 151222Mer_D15-10772_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:15 5.3K [   ] 151222Mer_D15-10772_NA_sequence.fastq.untrim.gz 14-Mar-2016 15:20 8.7M [   ] 151222Mer_D15-10773_NA_sequence.fastq.gz 14-Mar-2016 12:17 740M [   ] 151222Mer_D15-10773_NA_sequence.fastq.trim.gz 14-Mar-2016 15:26 497M [   ] 151222Mer_D15-10773_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:36 697M [   ] 151222Mer_D15-10773_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:16 5.3K [   ] 151222Mer_D15-10773_NA_sequence.fastq.untrim.gz 14-Mar-2016 15:26 5.5M [   ] 151222Mer_D15-10774_NA_sequence.fastq.gz 14-Mar-2016 12:19 1.2G [   ] 151222Mer_D15-10774_NA_sequence.fastq.trim.gz 14-Mar-2016 15:37 807M [   ] 151222Mer_D15-10774_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:40 1.1G [   ] 151222Mer_D15-10774_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:18 5.3K [   ] 151222Mer_D15-10774_NA_sequence.fastq.untrim.gz 14-Mar-2016 15:37 35M [   ] 151222Mer_D15-10775_NA_sequence.fastq.gz 14-Mar-2016 12:21 1.2G [   ] 151222Mer_D15-10775_NA_sequence.fastq.trim.gz 14-Mar-2016 15:50 804M [   ] 151222Mer_D15-10775_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:44 1.1G [   ] 151222Mer_D15-10775_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:21 5.3K [   ] 151222Mer_D15-10775_NA_sequence.fastq.untrim.gz 14-Mar-2016 15:50 27M [   ] 151222Mer_D15-10776_NA_sequence.fastq.gz 14-Mar-2016 12:24 1.3G [   ] 151222Mer_D15-10776_NA_sequence.fastq.trim.gz 14-Mar-2016 16:04 883M [   ] 151222Mer_D15-10776_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:48 1.2G [   ] 151222Mer_D15-10776_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:23 5.5K [   ] 151222Mer_D15-10776_NA_sequence.fastq.untrim.gz 14-Mar-2016 16:04 29M [   ] 151222Mer_D15-10777_NA_sequence.fastq.gz 14-Mar-2016 12:26 1.2G [   ] 151222Mer_D15-10777_NA_sequence.fastq.trim.gz 14-Mar-2016 16:16 794M [   ] 151222Mer_D15-10777_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 12:53 1.1G [   ] 151222Mer_D15-10777_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:26 5.4K [   ] 151222Mer_D15-10777_NA_sequence.fastq.untrim.gz 14-Mar-2016 16:16 34M [   ] 151222Mer_D15-10778_NA_sequence.fastq.gz 14-Mar-2016 12:30 2.5G [   ] 151222Mer_D15-10778_NA_sequence.fastq.trim.gz 14-Mar-2016 16:42 1.7G [   ] 151222Mer_D15-10778_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 13:01 2.3G [   ] 151222Mer_D15-10778_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:31 5.4K [   ] 151222Mer_D15-10778_NA_sequence.fastq.untrim.gz 14-Mar-2016 16:42 33M [   ] 151222Mer_D15-10779_NA_sequence.fastq.gz 14-Mar-2016 12:33 1.5G [   ] 151222Mer_D15-10779_NA_sequence.fastq.trim.gz 14-Mar-2016 16:56 1.0G [   ] 151222Mer_D15-10779_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 13:07 1.4G [   ] 151222Mer_D15-10779_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:34 5.3K [   ] 151222Mer_D15-10779_NA_sequence.fastq.untrim.gz 14-Mar-2016 16:56 32M [   ] 151222Mer_D15-10780_NA_sequence.fastq.gz 14-Mar-2016 12:35 1.8G [   ] 151222Mer_D15-10780_NA_sequence.fastq.trim.gz 14-Mar-2016 17:15 1.2G [   ] 151222Mer_D15-10780_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 13:13 1.7G [   ] 151222Mer_D15-10780_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:38 5.7K [   ] 151222Mer_D15-10780_NA_sequence.fastq.untrim.gz 14-Mar-2016 17:15 24M [   ] 151222Mer_D16-394_NA_sequence.fastq.gz 14-Mar-2016 12:37 950M [   ] 151222Mer_D16-394_NA_sequence.fastq.trim.gz 14-Mar-2016 17:27 582M [   ] 151222Mer_D16-394_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 13:16 820M [   ] 151222Mer_D16-394_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:39 5.5K [   ] 151222Mer_D16-394_NA_sequence.fastq.untrim.gz 14-Mar-2016 17:27 73M [   ] 151222Mer_D16-395_NA_sequence.fastq.gz 14-Mar-2016 12:39 909M [   ] 151222Mer_D16-395_NA_sequence.fastq.trim.gz 14-Mar-2016 17:38 603M [   ] 151222Mer_D16-395_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 13:18 857M [   ] 151222Mer_D16-395_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:41 5.6K [   ] 151222Mer_D16-395_NA_sequence.fastq.untrim.gz 14-Mar-2016 17:38 12M [   ] 151222Mer_D16-396_NA_sequence.fastq.gz 14-Mar-2016 12:41 1.1G [   ] 151222Mer_D16-396_NA_sequence.fastq.trim.gz 14-Mar-2016 17:49 716M [   ] 151222Mer_D16-396_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 13:22 1.0G [   ] 151222Mer_D16-396_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:43 5.6K [   ] 151222Mer_D16-396_NA_sequence.fastq.untrim.gz 14-Mar-2016 17:49 25M [   ] 151222Mer_D16-397_NA_sequence.fastq.gz 14-Mar-2016 12:41 630K [   ] 151222Mer_D16-397_NA_sequence.fastq.trim.gz 14-Mar-2016 17:50 411K [   ] 151222Mer_D16-397_NA_sequence.fastq.trim.sam.bam 18-Mar-2016 13:22 566K [   ] 151222Mer_D16-397_NA_sequence.fastq.trim.sam.summary 15-Mar-2016 06:43 4.0K [   ] 151222Mer_D16-397_NA_sequence.fastq.untrim.gz 14-Mar-2016 17:50 28K [   ] CountsForTesting.xlsx 16-Mar-2016 07:12 56K [   ] ExcludedHairpins.xlsx 17-Mar-2016 07:52 13K [   ] FrequentUnmappedSeqs.xlsx 17-Mar-2016 13:28 296K [   ] FrequentUntrimmedSeqs.xlsx 17-Mar-2016 16:12 229K [   ] ORD4213.fasta 14-Mar-2016 10:33 43K [   ] ORD4213.fasta.amb 14-Mar-2016 12:21 12 [   ] ORD4213.fasta.ann 14-Mar-2016 12:21 12K [   ] ORD4213.fasta.bwt 14-Mar-2016 12:21 39K [   ] ORD4213.fasta.nhr 17-Mar-2016 06:56 29K [   ] ORD4213.fasta.nin 17-Mar-2016 06:56 4.9K [   ] ORD4213.fasta.nsq 17-Mar-2016 06:56 10K [   ] ORD4213.fasta.pac 14-Mar-2016 12:21 9.7K [   ] ORD4213.fasta.sa 14-Mar-2016 12:21 19K [   ] ORD4213_Merrimack_customer and Silvias extras controls.xlsx 15-Mar-2016 06:59 32K [   ] Pivoted.xlsx 15-Mar-2016 06:59 250K [   ] Processed.dxp 17-Mar-2016 16:11 362K [   ] Processed.xlsx 16-Mar-2016 13:57 307K [   ] SOW-Merrimack.pdf 08-Mar-2016 20:41 99K [   ] SampleAnnotation.xlsx 15-Mar-2016 07:11 8.2K [   ] SeqCounts.dxp 17-Mar-2016 16:12 16M [TXT] SeqCounts.txt 17-Mar-2016 06:35 1.3K [   ] SeqCounts.xlsx 17-Mar-2016 16:12 12K [   ] Standard Form SBC Merrimack.pdf 29-Feb-2016 05:51 141K [   ] UnsupervisedClustering.pdf 16-Mar-2016 06:53 133K [   ] UnsupervisedClusteringSelected.pdf 16-Mar-2016 07:10 105K [   ] alignmentStats.sh 17-Mar-2016 07:51 331 [   ] bwa.sh 14-Mar-2016 12:33 336 [   ] clip.sh 14-Mar-2016 12:58 299 [DIR] counts2_output/ 16-Mar-2016 12:39 - [DIR] counts_output/ 16-Mar-2016 12:41 - [   ] deseq.local.r 16-Mar-2016 10:43 2.6K [   ] deseq.r 16-Mar-2016 09:28 2.5K [   ] gen.sh 14-Mar-2016 10:31 354 [   ] mpVSmm_scatter.pdf 16-Mar-2016 14:01 33K [TXT] named.txt 15-Mar-2016 06:46 565K [   ] named.xlsx 15-Mar-2016 06:51 179K [TXT] ppvsmp.csv 17-Mar-2016 15:40 42K [   ] summarize.sh 15-Mar-2016 05:35 391 [TXT] testclip_results.txt 17-Mar-2016 06:33 1.8K [   ] top1000untrim_to_ORD.xlsx 17-Mar-2016 07:52 77K [   ] unmappedBlast.fa 17-Mar-2016 13:03 448 [   ] unmapped_summarize.sh 17-Mar-2016 09:54 240 [   ] untrimCont.fastq.gz 17-Mar-2016 06:39 134M [   ] untrimControl.fa 17-Mar-2016 06:55 23M [   ] untrimControl_top100.fa 17-Mar-2016 06:57 5.9K [   ] untrimControl_top1000.fa 17-Mar-2016 07:30 59K [   ] untrim_summary.sh 17-Mar-2016 08:00 106 [   ] untrimmedBlast.fa 17-Mar-2016 12:58 1.0K